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In reciprocal altruism, is considered one of the two primary mechanisms for the evolution of social behaviors in natural species.
From the gene's point of view, evolutionary success ultimately depends on leaving behind the maximum number of copies of itself in the population. Until 1964, it was generally believed that genes only achieved this by causing the individual to leave the maximum number of viable direct offspring. However, in 1964 W. D. Hamilton showed mathematically that, because other members of a population may share identical genes, a gene can also increase its evolutionary success by indirectly promoting the reproduction and survival of such individuals. The most obvious category of such individuals is close genetic relatives, and where these are concerned, the application of inclusive fitness theory is often more straightforwardly treated via the narrower kin selection theory.
Belding's ground squirrel provides an example. The ground squirrel gives an alarm call to warn its local group of the presence of a predator. By emitting the alarm, it gives its own location away, putting itself in more danger. In the process, however, the squirrel may protect its relatives within the local group (along with the rest of the group). Therefore, if the effect of the trait influencing the alarm call typically protects the other squirrels in the immediate area, it will lead to the passing on of more of copies of the alarm call trait in the next generation than the squirrel could leave by reproducing on its own. In such a case natural selection will increase the trait that influences giving the alarm call, provided that a sufficient fraction of the shared genes include the gene(s) predisposing to the alarm call.
Inclusive fitness theory was developed in order to better understand collateral altruism, but this does not mean that it is limited to collateral altruism. It applies just as well to parental care. Which perspective one chooses does not affect the animals but just one's understanding.
In Hamilton's paradigm, fitnesses calculated according to in the weaning-to-weaning perspective are inclusive fitnesses, and fitnesses calculated in the conception-to-conception perspective are personal fitnesses. This distinction is independent of whether the altruism involved in child rearing is toward descendents or toward collateral relatives, as when aunts and uncle rear their nieces and nephews.
Alternatively, if one considers the life cycle as extending from weaning to weaning, the same mortality would be considered a diminution in the parents' fecundity, and therefore a diminution of the parent's fitness.
If one considers a life cycle as extending from conception to conception, and an animal is an offspring of parents with poor parental care, then the higher mortality with poor care could be considered a diminution of the offspring's expected fitness.
Some might express concern that parental investment (parental care) is said to contribute to inclusive fitness. The distinctions between the kind of beneficiaries nurtured (collateral versus descendant relatives) and the kind of fitnesses used (inclusive versus personal) in the parsing of nature are orthogonal concepts. This orthogonality can best be understood in a thought experiment: Consider a model of a population of animals such as crocodiles or tangle web spiders. Some species or populations of these spiders and reptiles exhibit parental care, while closely related species or populations lack it. Assume that in these animals a gene, called a, codes for parental care, and its other allele, called A, codes for an absence thereof. The aa homozygotes care for their young, and AA homozygotes don't, and the heterozygotes behave like aa homozygotes if a is dominant, and like AA homozygotes if A is dominant, or exhibit some kind of intermediate behavior if there is partial dominance. Other kinds of animals could be considered in which all individuals exhibit parental care, but variation among them would be in the quantity and quality thereof.
Inclusive fitness and parental care
Equally, cheaters may not be able to invade the green-beard population if the mechanism for preferential treatment and the phenotype are intrinsically linked. In budding yeast (Saccharomyces Cerevisiae), the dominant allele FLO1 is responsible for flocculation (self adherence between cells) which helps protect them against harmful substances such as ethanol. While 'cheater' yeast cells occasionally find their way into the biofilm-like substance that is formed from FLO1 expressing yeast, they cannot invade as the FLO1 expressing yeast will not bind to them in return, and thus the phenotype is intrinsically linked to the preference.
The green-beard effect was originally a thought experiment by Hamilton in his publications on inclusive fitness in 1964, although it hadn't yet been observed. As of today, it has been observed in few species. Its rarity is probably due to its susceptibility to 'cheating' whereby individuals can gain the trait that confers the advantage, without the altruistic behavior. This normally would occur via the crossing over of chromosomes which happens frequently, often rendering the green-beard effect a transient state. However, Wang et al has shown in one of the species where the effect is common (fire ants), recombination cannot occur due to a large genetic transversion, essentially forming a supergene. This, along with homozygote inviability at the green-beard loci allows for the extended maintenance of the green-beard effect.
The green beard effect is the act of a gene (or several closely linked gene), that: 1) Produces a phenotype. 2) Allows recognition of that phenotype in others. 3) Causes the individual to preferentially treat other individuals with the same gene.
As well as interactions within reliable contexts of genetic relatedness, altruists may also have some way to recognize altruistic behavior in unrelated individuals and be inclined to support them. As Dawkins points out in The Selfish Gene (Chapter 6) and The Extended Phenotype, this must be distinguished from the green-beard effect.
In his original papers on inclusive fitness theory, Hamilton pointed out a sufficiently high relatedness to favour altruistic behaviours could accrue in two ways —kin discrimination or limited dispersal ( Hamilton, 1964, 1971,1972, 1975). There is a huge theoretical literature on the possible role of limited dispersal reviewed by Platt & Bever (2009) and West et al. (2002a), as well as experimental evolution tests of these models (Diggle et al., 2007; Griffin et al., 2004; Kümmerli et al., 2009 ). However, despite this, it is still sometimes claimed that kin selection requires kin discrimination (Oates & Wilson, 2001; Silk, 2002 ). Furthermore, a large number of authors appear to have implicitly or explicitly assumed that kin discrimination is the only mechanism by which altruistic behaviours can be directed towards relatives... [T]here is a huge industry of papers reinventing limited dispersal as an explanation for cooperation. The mistakes in these areas seem to stem from the incorrect assumption that kin selection or indirect fitness benefits require kin discrimination (misconception 5), despite the fact that Hamilton pointed out the potential role of limited dispersal in his earliest papers on inclusive fitness theory (Hamilton, 1964; Hamilton, 1971; Hamilton, 1972; Hamilton, 1975). (West et al. 2010, p.243 and supplement)
Such misunderstandings of inclusive fitness' implications for the study of altruism, even amongst professional biologists utilizing the theory, are widespread, prompting prominent theorists to regularly attempt to highlight and clarify the mistakes. Here is one recent example of attempted clarification from West et al. (2010):
[M]any misunderstandings persist. In many cases, they result from conflating "coefficient of relatedness" and "proportion of shared genes," which is a short step from the intuitively appealing—but incorrect—interpretation that "animals tend to be altruistic toward those with whom they share a lot of genes." These misunderstandings don't just crop up occasionally; they are repeated in many writings, including undergraduate psychology textbooks—most of them in the field of social psychology, within sections describing evolutionary approaches to altruism. (Park 2007, p860)
Evidence from a variety of species  including humans, primates and other social mammals suggests that contextual cues (such as familiarity) are often significant proximate mechanisms mediating the expression of altruistic behavior, regardless of whether the participants are always in fact genetic relatives or not. This is nevertheless evolutionarily stable since selection pressure acts on the typical conditions, not on the rare occasions where actual genetic relatedness differs from that normally encountered (see Sherman above). Inclusive fitness theory thus does not imply that organisms evolve to direct altruism towards genetic relatives. Many popular treatments do however promote this interpretation, as illustrated in a recent review:
If families [genetic relatives] happen to go around in groups, this fact provides a useful rule of thumb for kin selection: 'care for any individual you often see'." (Dawkins 1979, 187)
The occurrence of sibling cannibalism in several species underlines the point that inclusive fitness theory should not be understood to simply predict that genetically related individuals will inevitably recognize and engage in positive social behaviors towards genetic relatives. Only in species that have the appropriate traits in their gene pool, and in which individuals typically interacted with genetic relatives in the natural conditions of their evolutionary history, will social behavior potentially be elaborated, and consideration of the evolutionarily typical demographic composition of grouping contexts of that species is thus a first step in understanding how selection pressures upon inclusive fitness have shaped the forms of its social behavior. Dawkins gives a simplified illustration:
To understand any species' pattern of nepotism, two questions about individuals' behavior must be considered: (1) what is reproductively ideal?, and (2) what is socially possible? With his formulation of "inclusive fitness," Hamilton suggested a mathematical way of answering (1). Here I suggest that the answer to (2) depends on demography, particularly its spatial component, dispersal, and its temporal component, mortality. Only when ecological circumstances affecting demography consistently make it socially possible will nepotism be elaborated according to what is reproductively ideal. For example, if dispersing is advantageous and if it usually separates relatives permanently, as in many birds (Nice 1937: 180-187; Gross 1940; Robertson 1969), on the rare occasions when nestmates or other kin live in proximity, they will not preferentially cooperate. Similarly, nepotism will not be elaborated among relatives that have infrequently coexisted in a population's or a species' evolutionary history. If an animal's life history characteristics (Stearns 1976; Warner this volume) usually preclude the existence of certain relatives, that is if kin are usually unavailable, the rare coexistence of such kin will not occasion preferential treatment. For example, if reproductives generally die soon after zygotes are formed, as in many temperate zone insects, the unusual individual that survives to interact with its offspring is not expected to behave parentally. (Sherman 1980, 530, underlining in original) 
The concept serves to explain how natural selection can perpetuate common descent. In formal terms, if such a complex of genes arises, Hamilton's rule (rb>c) specifies the selective criteria (in terms of cost, benefit and relatedness) for such a trait to increase in frequency in the population. Hamilton noted that inclusive fitness theory does not by itself predict that a species will necessarily evolve such altruistic behaviors, since an opportunity or context for interaction between individuals is a more primary and necessary requirement in order for any social interaction to occur in the first place. As Hamilton put it, "Altruistic or selfish acts are only possible when a suitable social object is available. In this sense behaviours are conditional from the start." (Hamilton 1987, 420). In other words, whilst inclusive fitness theory specifies a set of necessary criteria for the evolution of altruistic traits, it does not specify a sufficient condition for their evolution in any given species. More primary necessary criteria include the existence of gene complexes for altruistic traits in gene pool, as mentioned above, and especially that "a suitable social object is available", as Hamilton noted. Paul Sherman, who has contributed much research on the ground squirrels mentioned above, gives a fuller discussion of Hamilton's latter point:
Inclusive fitness and altruism
In a recent paper, Gardner et al.(2007) suggest that Hamilton's rule can be applied to multi-locus models, but that it should be done at the point of interpreting theory, rather than the starting point of enquiry. They suggest that one should "use standard population genetics, game theory, or other methodologies to derive a condition for when the social trait of interest is favored by selection and then use Hamilton's rule as an aid for conceptualizing this result". A recent paper by Nowak et al. (2010) suggested that standard natural selection theory is superior to inclusive fitness theory, stating that the interactions between cost and benefit can not be explained only in terms of relatedness. This, Nowak said, makes Hamilton's rule at worst superfluous and at best ad hoc. Gardner in turn was critical of the paper, describing it as "a really terrible article", and along with other co-authors has written a reply, submitted to Nature. In work prior to Nowak, various authors derived different versions of a formula for r, all designed to preserve Hamilton's rule. Orlove noted that if a formula for r is defined so as to ensure that Hamilton's rule is preserved, then the approach is by definition ad hoc. However, he published an unrelated derivation of the same formula for r – a derivation designed to preserve two statements about the rate of selection – which on its own was similarly ad hoc. Orlove argued that the existence of two unrelated derivations of the formula for r reduces or eliminates the ad hoc nature of the formula, and of inclusive fitness theory as well. The derivations were demonstrated to be unrelated by corresponding parts of the two identical formulae for r being derived from the genotypes of different individuals. The parts that were derived from the genotypes of different individuals were terms to the right of the minus sign in the covariances in the two versions of the formula for r. By contrast, the terms left of the minus sign in both derivations come from the same source. One study suggest the c/b ratio be considered as a continuum of this behavioral trait rather than discontinuous in nature. From this approach fitness transactions can be better observed because there is more to what is happening to affect an individual's fitness than just losing and gaining (Engles, W.R. 1982).
- r \ is the probability, above the population average, of the individuals sharing an altruistic gene – commonly viewed as "degree of relatedness".
- b \ is the reproductive benefit to the recipient of the altruistic behavior, and
- c \ is the reproductive cost to the altruist,
Hamilton's rule describes mathematically whether or not a gene for altruistic behavior will spread in a population:
In the context of sociobiology, which holds that some behavior can be influenced by genes and therefore can evolve by natural selection, Hamilton proposed that inclusive fitness offers a mechanism for the evolution of altruism. He claimed that this leads natural selection to favor organisms that behave in ways that correlate with maximizing their inclusive fitness.
- Hamilton's rule 1
- Inclusive fitness and altruism 2
- Green-beard effects 3
- Inclusive fitness and parental care 4
- See also 5
- References 6
- Sources 7
Inclusive fitness is more generalized than strict kin selection, which requires that the shared genes are identical by descent. Inclusive fitness is not limited to cases where "kin" ('close genetic relatives') are involved.